List of species and infraspecific taxa
- Species: Pertusaria ophthalmiza (Nyl.) Nyl.
- Remark: see: Lepra ophthalmiza
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Pertusaria pertusa (Weigel) Tuck.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- näsa-lumisamblik
- Species: Pertusaria pupillaris (Nyl.) Th. Fr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Pertusaria raesaenenii Erichsen
- Remark: excluded as misidentification: re-identified as Pertusaria leucostoma
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Species: Petractis clausa (Hoffm.) Kremp.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Pezizella epithallina (W. Phillips & Plowr.) Sacc.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Phacopsis fusca (Triebel & Rambold) Diederich
- Remark: see: Nesolechia fusca
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Phacopsis oxyspora (Tul.) Triebel & Rambold
- Remark: see: Nesolechia oxyspora
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Phaeocalicium populneum (Brond. ex Duby) A.F.W. Schmidt
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Phaeocalicium praecedens (Nyl.) A.F.W. Schmidt
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Phaeophyscia chloantha (Ach.) Moberg
- Remark: see: Physciella chloantha
- Fungus type: lichenized
- Treatment in Estonia: synonym extinct
- lõuna-tõmmusamblik
- Species: Phaeophyscia ciliata (Hoffm.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- rips-tõmmusamblik
- Species: Phaeophyscia constipata (Norrl. & Nyl.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: doubtful extinct
- põhja-tõmmusamblik
- Species: Phaeophyscia endococcina (Körb.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- punasesüdamikuline tõmmusamblik
- Species: Phaeophyscia endophoenicea (Harm.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- kollakas tõmmusamblik
- Species: Phaeophyscia nigricans (Flörke) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- väike tõmmusamblik
- Species: Phaeophyscia orbicularis (Neck.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- hägu-tõmmusamblik
- Species: Phaeophyscia sciastra (Ach.) Moberg
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- kivi-tõmmusamblik
- Species: Phaeopyxis punctum (A. Massal.) Rambold, Triebel & Coppins
- Remark: see: Bachmanniomyces punctum (A. Massal.) Diederich & Pino-Bodas
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Phaeospora peltigericola D. Hawksw.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Phaeosporobolus alpinus R. Sant., Alstrup & D. Hawksw.
- Remark: see: Lichenostigma alpinum
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Phaeosporobolus usneae D. Hawksw. & Hafellner
- Remark: see: Lichenostigma maureri Hafellner
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Phlyctis agelaea (Ach.) Flot.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- täpiline jahusamblik
- Species: Phlyctis argena (Spreng.) Flot.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- harilik jahusamblik
- Species: Phoma cytospora (Vouaux) D. Hawksw.
- Remark: see: Briancoppinsia cytospora
- Fungus type: lichenicolous
- Treatment in Estonia: synonym