List of species and infraspecific taxa
- Species: Arthonia digitatae Hafellner
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia dispersa (Schrad.) Nyl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia epiphyscia Nyl.
- Remark: see: Bryostigma epiphyscium
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Arthonia farinacea (H. Olivier) R. Sant.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia galactinaria Leight.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia glaucomaria Nyl.
- Remark: see: Arthonia varians
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Arthonia incarnata Almq.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia intexta Almq.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia lapidicola (Taylor) Branth. & Rostr.
- Remark: see: Bryostigma lapidicola (Taylor) S.Y. Kondr. & Hur
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia leucopellaea (Ach.) Almq.
- Remark: see: Felipes leucopellaeus (Ach.) Frisch & G. Thor
- Fungus type: lichenized
- Treatment in Estonia: synonym
- valkjas tähnsamblik
- Species: Arthonia ligniaria Hellb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia mediella Nyl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia muscigena Th. Fr.
- Remark: see: Bryostigma muscigenum
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia patellulata Nyl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia punctiformis Ach.
- Remark: see: Naevia punctiformis
- Fungus type: saprotrophic
- Treatment in Estonia: synonym
- Species: Arthonia radiata (Pers.) Ach.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia ruana A. Massal.
- Remark: see: Arthothelium ruanum
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia spadicea Leight.
- Remark: see:Diarthonis spadicea
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia varians (Davies) Nyl.
- Remark: earlier under Arthonia glaucomaria Nyl.
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia vinosa Leight.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- puna-tähnsamblik
- Species: Arthopyrenia analepta Anzi
- Remark: earlier under Arthopyrenia lapponina Anzi
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Arthopyrenia antecellens (Nyl.) Arnold
- Remark: see: Mycoporum antecellens
- Fungus type: saprotrophic
- Treatment in Estonia: synonym
- Species: Arthopyrenia cerasi (Schrad.) A. Massal.
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Arthopyrenia cinereopruinosa (Schaer.) A. Massal.
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Arthopyrenia grisea (Schleich. ex Schaer.) Körb.
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain