• Species: Diplotomma pharcidium (Ach.) M. Choisy
• Remark: earlier under Buellia pharcidia (Ach.) Malme
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Diplotomma venustum Körb.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Dirina massiliensis f. sorediata (Müll. Arg.) Tehler
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Elixia flexella (Ach.) Lumbsch
• Remark: earlier under Ptychocarpa flexella (Ach.) Coppins
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Endocarpon psorodeum (Nyl.) Blomb. & Forssell
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain
• hall agusamblik

• Species: Endocarpon pusillum Hedw.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain
• väike agusamblik

• Species: Endococcus exerrans Nyl.
• Remark: includes earlier misidentification of Endococcus perpusillus Nyl.
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Endococcus nanellus Ohlert
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain extinct

• Species: Endococcus perpusillus Nyl.
• Remark: excluded as misidentification: re-identified as Endococcus exerrans
• Fungus type: lichenicolous
• Treatment in Estonia: misidentification

• Species: Endococcus propinquus (Körb.) D. Hawksw.
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Endococcus protoblasteniae Diederich
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Endococcus rugulosus Nyl.
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Eopyrenula leucoplaca (Wallr.) R.C. Harris
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Eopyrenula septemseptata Coppins
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Epicladonia sandstedei (Zopf) D. Hawksw.
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Epicladonia stenospora (Harm.) D. Hawksw.
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Epigloea urosperma Döbbeler
• Remark:
• Fungus type: lichenicolous
• Treatment in Estonia: certain

• Species: Epilichen scabrosus (Ach.) Clem.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Evernia divaricata (L.) Ach.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain
• pikk lõhnasamblik

• Species: Evernia mesomorpha Nyl.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain
• kahar lõhnasamblik

• Species: Evernia prunastri (L.) Ach.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain
• kollane lõhnasamblik

• Species: Farnoldia jurana (Schaer.) Hertel
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Fellhanera bouteillei (Desm.) Vězda
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Fellhanera gyrophorica Sérus., Coppins, Diederich & Scheid.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species: Fellhanera subtilis (Vezda) Diederich & Serus.
• Remark:
• Fungus type: lichenized
• Treatment in Estonia: certain

• Species:
• Remark:
• Fungus type:
• Treatment in Estonia: