List of species and infraspecific taxa
- Species: Amandinea punctata (Hoffm.) Coppins & Scheid.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Amygdalaria panaeola (Ach.) Hertel & Brodo
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain extinct
- Species: Anaptychia ciliaris (L.) Körb. var. ciliaris
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: synonym
- harilik ripssamblik
- Species: Anaptychia ciliaris var. melanosticta (Ach.) Boistel
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: synonym
- meri-ripssamblik
- Species: Anaptychia runcinata (With.) J.R. Laundon
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- tõmmu ripssamblik
- Species: Anisomeridium biforme (Borrer) R.C. Harris
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Anisomeridium polypori (Ellis & Everh.) M.E. Barr
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arctoparmelia centrifuga (L.) Hale
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- sõõr-põhjasamblik
- Species: Arctoparmelia incurva (Pers.) Hale
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- pais-põhjasamblik
- Species: Arthonia apatetica (A. Massal.) Th. Fr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia byssacea (Weigel) Almq.
- Remark: see: Inoderma byssaceum (Weigel) Gray
- Fungus type: lichenized
- Treatment in Estonia: synonym
- rant-tähnsamblik
- Species: Arthonia caerulescens (Almq.) R. Sant.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia cinnabarina (DC.) Wallr.
- Remark: see: Coniocarpon cinnabarinum DC.
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia didyma Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia digitatae Hafellner
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia dispersa (Schrad.) Nyl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia epiphyscia Nyl.
- Remark: see: Bryostigma epiphyscium
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Arthonia farinacea (H. Olivier) R. Sant.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia galactinaria Leight.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia glaucomaria Nyl.
- Remark: see: Arthonia varians
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Arthonia incarnata Almq.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia intexta Almq.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Arthonia lapidicola (Taylor) Branth. & Rostr.
- Remark: see: Bryostigma lapidicola (Taylor) S.Y. Kondr. & Hur
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia leucopellaea (Ach.) Almq.
- Remark: see: Felipes leucopellaeus (Ach.) Frisch & G. Thor
- Fungus type: lichenized
- Treatment in Estonia: synonym
- valkjas tähnsamblik
- Species: Arthonia ligniaria Hellb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain