List of species and infraspecific taxa
- Species: Chaenotheca gracilenta (Ach.) Mattsson & Middelb.
- Remark: earlier under Cybebe gracilenta (Ach.) Tibell
- Fungus type: lichenized
- Treatment in Estonia: certain
- sire varjusamblik (endine sire säärsamblik)
- Species: Chaenotheca gracillima (Vain.) Tibell
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenotheca hispidula (Ach.) Zahlbr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenotheca laevigata Nádv.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenotheca phaeocephala (Turner) Th. Fr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- soomus-varjusamblik
- Species: Chaenotheca stemonea (Ach.) Müll. Arg.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenotheca subroscida (Eitner) Zahlbr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- kuuse-varjusamblik
- Species: Chaenotheca trichialis (Ach.) Th. Fr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenotheca xyloxena Nádv.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Chaenothecopsis consociata (Nadv.) A.F.W. Schmidt
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis debilis (Sm.) Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis epithallina Tibell
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis haematopus Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis hospitans (Th. Fr.) Tibell
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis nana Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis nigra Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis pusilla (Ach.) A.F.W. Schmidt
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis pusiola (Ach.) Vain.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis rubescens Vain.
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis savonica (Räsänen) Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Chaenothecopsis subparoica (Nyl.) Tibell
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis vainioana (Nadv.) Tibell
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Chaenothecopsis viridireagens (Nadv.) A F.W. Schmidt
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Cheiromycina petri D. Hawksw. & Poelt
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Cheiromycina reimeri Printzen
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain