List of species and infraspecific taxa
- Species: Lichenothelia renobalesiana D. Hawksw. & V. Atienza
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Neocoleroa inundata (Vain.) Diederich
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Phaeocalicium tremulicola (Norrl. ex Nyl.) Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: doubtful
- Species: Porina borreri (Trevis.) D. Hawksw. & P. James
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Pronectria santessonii (Lowen & D. Hawksw.) Lowen
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Rinodina fimbriata Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Staurothele hymenogonia (Nyl.) Th. Fr.
- Remark: see: Nesothele hymenogonia
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Stigmidium rivulorum (Kernst.) Cl. Roux & Nav.-Ros.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Verrucaria boblensis Servít
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Cladonia straminea (Sommerf.) Flörke
- Remark: earlier under Cladonia metacorallifera Asahina
- Fungus type: lichenized
- Treatment in Estonia: certain
- liud-porosamblik
- Species: Collema dichotomum (With.) Coppins & J.R. Laundon
- Remark: see: Lathagrium dichotomum; earlier under Collema fluviatile
- Fungus type: lichenized
- Treatment in Estonia: synonym extinct
- jõgi-limasamblik
- Species: Epiphloea byssina (Hoffm.) Henssen & P.M. Jørg.
- Remark: earlier under Leptogium byssinum
- Fungus type: lichenized
- Treatment in Estonia: certain
- koorik-tardsamblik
- Species: Peltigera extenuata (Nyl. ex Vain.) Lojka
- Remark: earlier under Peltigera didactyla var. extenuata (Nyl. ex Vain.) Goffinet & Hastings
- Fungus type: lichenized
- Treatment in Estonia: certain
- tera-kilpsamblik
- Species: Lecanora semipallida H. Magn.
- Remark: see: Myriolecis semipallida; earlier under Lecanora xanthostoma; includes Lecanora flotoviana
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Arthonia subfuscicola (Linds.) Triebel
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Caloplaca dichroa Arup
- Remark: see: Flavoplaca dichroa
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Epicladonia simplex D. Hawksw.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Nectriopsis parmeliae (Berk. & M.A. Curtis) M.S. Cole & D. Hawksw.
- Remark: see: Ovicuculispora parmeliae (Berk. & M.A. Curtis) Etayo
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Pronectria oligospora Lowen & Rogerson
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Rhizocarpon submodestum (Vainio) Vainio
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Rimularia intercedens (H. Magn.) Coppins
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Trichonectria rubefaciens (Ellis & Everh.) Diederich & Schroers
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Umbilicaria hirsuta (Sw. ex Westr.) Hoffm.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- laik-kõrvsamblik
- Species: Acarospora moenium (Vain.) Räsänen
- Remark: earlier under Aspicilia moenium
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Alyxoria mougeotii (A. Massal.) Ertz, Frisch & G. Thor
- Remark: earlier under Opegrapha mougeotii
- Fungus type: lichenized
- Treatment in Estonia: certain