List of species and infraspecific taxa
- Species: Verrucaria rupestris Schrad.
- Remark: see: Verrucaria muralis Ach.
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Absconditella trivialis (Willey ex Tuck.) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Anisomeridium carinthiacum (J. Steiner) R.C. Harris
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidia hemipolia f. pallida Czarnota & Coppins
- Remark: see: Biatora hemipolia
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Carbonea supersparsa (Nyl.) Hertel
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Eiglera flavida (Hepp) Hafellner
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Hydropunctaria rheitrophila (Zschacke) C. Keller, Gueidan & Thüs
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora farinaria Borrer
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora soralifera (Suza) Räsänen
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecidea degeliana Hertel
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Lichenopeltella hydrophila R. Sant.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Lichenothelia renobalesiana D. Hawksw. & V. Atienza
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Neocoleroa inundata (Vain.) Diederich
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Phaeocalicium tremulicola (Norrl. ex Nyl.) Tibell
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: doubtful
- Species: Porina borreri (Trevis.) D. Hawksw. & P. James
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Pronectria santessonii (Lowen & D. Hawksw.) Lowen
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Rinodina fimbriata Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Staurothele hymenogonia (Nyl.) Th. Fr.
- Remark: see: Nesothele hymenogonia
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Stigmidium rivulorum (Kernst.) Cl. Roux & Nav.-Ros.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Verrucaria boblensis Servít
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Cladonia straminea (Sommerf.) Flörke
- Remark: earlier under Cladonia metacorallifera Asahina
- Fungus type: lichenized
- Treatment in Estonia: certain
- liud-porosamblik
- Species: Collema dichotomum (With.) Coppins & J.R. Laundon
- Remark: see: Lathagrium dichotomum; earlier under Collema fluviatile
- Fungus type: lichenized
- Treatment in Estonia: synonym extinct
- jõgi-limasamblik
- Species: Epiphloea byssina (Hoffm.) Henssen & P.M. Jørg.
- Remark: earlier under Leptogium byssinum
- Fungus type: lichenized
- Treatment in Estonia: certain
- koorik-tardsamblik
- Species: Peltigera extenuata (Nyl. ex Vain.) Lojka
- Remark: earlier under Peltigera didactyla var. extenuata (Nyl. ex Vain.) Goffinet & Hastings
- Fungus type: lichenized
- Treatment in Estonia: certain
- tera-kilpsamblik
- Species: Lecanora semipallida H. Magn.
- Remark: see: Myriolecis semipallida; earlier under Lecanora xanthostoma; includes Lecanora flotoviana
- Fungus type: lichenized
- Treatment in Estonia: synonym