List of species and infraspecific taxa
- Species: Cladonia arbuscula (Wallr.) Flot.
- Remark: earlier under Cladina arbuscula (Wallr.) Hale & W.L. Culb.
- Fungus type: lichenized
- Treatment in Estonia: certain
- mets-põdrasamblik
- Species: Cladonia ciliata Stirt.
- Remark: earlier under Cladina ciliata var. tenuis (Flörke) Ahti & M.J. Lai
- Fungus type: lichenized
- Treatment in Estonia: certain
- peen põdrasamblik
- Species: Cladonia mitis Sandst.
- Remark: earlier under Cladina mitis (Sandst.) Hustich
- Fungus type: lichenized
- Treatment in Estonia: certain
- mahe põdrasamblik
- Species: Cladonia portentosa (Dufour) Coem.
- Remark: earlier under Cladina portentosa (Dufour) Follmann
- Fungus type: lichenized
- Treatment in Estonia: certain
- sagris põdrasamblik
- Species: Cladonia rangiferina (L.) F.H. Wigg.
- Remark: earlier under Cladina rangiferina (L.) Nyl.
- Fungus type: lichenized
- Treatment in Estonia: certain
- harilik põdrasamblik
- Species: Cladonia stellaris (Opiz) Pouzar & Vězda
- Remark: earlier under Cladina stellaris (Opiz) Brodo
- Fungus type: lichenized
- Treatment in Estonia: certain
- alpi põdrasamblik
- Species: Cladonia stygia (Fr.) Ruoss
- Remark: earlier under Cladina stygia (Fr.) Ahti
- Fungus type: lichenized
- Treatment in Estonia: certain
- raba-põdrasamblik
- Species: Coenogonium luteum (Dicks.) Kalb & Lücking
- Remark: earlier under Dimerella lutea (Dicks.) Trevis.
- Fungus type: lichenized
- Treatment in Estonia: certain
- kollane virvesamblik
- Species: Coenogonium pineti (Ach.) Lücking & Lumbsch
- Remark: earlier under Dimerella pineti (Ach.) Vězda
- Fungus type: lichenized
- Treatment in Estonia: certain
- männi-virvesamblik
- Species: Melanelixia glabratula (Lamy) Sandler & Arup
- Remark: earlier under Melanelixia fuliginosa ssp. glabratula (Lamy) J.R. Laundon and Melanelia fuliginosa ssp. glabratula (Lamy) Coppins
- Fungus type: lichenized
- Treatment in Estonia: certain
- rohekas pruunsamblik
- Species: Melanelixia fuliginosa (Fr. ex Duby.) O. Blanco, A. Crespo, Divakar, Essl., D. Hawksw. & Lumbsch
- Remark: earlier under Melanelia fuliginosa (Fr. ex Duby) Essl. ssp. fuliginosa and Melanelixia fuliginosa (Fr. ex Duby) O. Blanco et al. ssp. fuliginosa
- Fungus type: lichenized
- Treatment in Estonia: certain
- mustjas pruunsamblik
- Species: Lichenomphalia umbellifera (L.) Redhead, Lutzoni, Moncalvo & Vilgalys
- Remark: earlier under Omphalina umbellifera (L.) Quél.
- Fungus type: lichenized
- Treatment in Estonia: certain
- turba-sõlgsamblik
- Species: Parabagliettoa dufourii (DC.) Gueidan & Cl. Roux
- Remark: earlier under Verrucaria dufourii DC.
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Hydropunctaria maura (Wahlenb.) C. Keller, Gueidan & Thüs
- Remark: earlier under Verrucaria maura Wahlenb.
- Fungus type: lichenized
- Treatment in Estonia: certain
- meri-kirmesamblik
- Species: Verrucaria rupestris Schrad.
- Remark: see: Verrucaria muralis Ach.
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Absconditella trivialis (Willey ex Tuck.) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Anisomeridium carinthiacum (J. Steiner) R.C. Harris
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidia hemipolia f. pallida Czarnota & Coppins
- Remark: see: Biatora hemipolia
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Carbonea supersparsa (Nyl.) Hertel
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Eiglera flavida (Hepp) Hafellner
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Hydropunctaria rheitrophila (Zschacke) C. Keller, Gueidan & Thüs
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora farinaria Borrer
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora soralifera (Suza) Räsänen
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecidea degeliana Hertel
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Lichenopeltella hydrophila R. Sant.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain