List of species and infraspecific taxa
- Species: Lecania sylvestris (Arnold) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora persimilis (Th. Fr.) Nyl.
- Remark: see: Myriolecis persimilis (Th. Fr.) Śliwa, Zhao Xin & Lumbsch
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Lecanora zosterae (Ach.) Nyl.
- Remark: see: Myriolecis zosterae (Ach.) Śliwa, Zhao Xin & Lumbsch
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Lepraria sylvicola Orange
- Remark: excluded as misidentification: confirmation needs further chemical analyses
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Species: Lepraria celata Slav.-Bay.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: doubtful
- Species: Leptogium intermedium (Arnold) Arnold
- Remark: see: Scytinium intermedium
- Fungus type: lichenized
- Treatment in Estonia: synonym
- väheldane tardsamblik
- Species: Lichenostigma maureri Hafellner
- Remark: includes Phaeosporobolus usneae D. Hawksw. & Hafellner
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Merismatium discrepans (J. Lahm) Triebel
- Remark: see: Halospora discrepans
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Micarea lithinella (Nyl.) Hedl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Muellerella triseptata Diederich
- Remark: see: Capronia triseptata
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Ochrolechia bahusiensis H. Magn.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Opegrapha calcarea Turn. ex Sm.
- Remark: See: Arthonia calcarea
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Peltigera frippii Holt.-Hartw.
- Remark: excluded as misidentification: re-identified as Peltigera castanea
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Frippi kilpsamblik
- Species: Phaeospora parasitica (Lönnr.) Zopf
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Phaeospora rimosicola (Leight. ex Mudd) Hepp ex Stein
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Polyblastia sendtneri Kremp.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Staurothele rupifraga (A. Massal.) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Stigmidium clauzadei Cl. Roux & Nav.-Ros.
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Thelidium olivaceum (Fr.) Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Thelidium papulare (Fr.) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Thelocarpon intermediellum Nyl.
- Remark:
- Fungus type: saprotrophic
- Treatment in Estonia: certain
- Species: Tremella candelariellae Diederich & Etayo
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Unguiculariopsis thallophila (P. Karst.) W.Y. Zhuang
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Verrucaria hochstetteri Fr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Caloplaca stillicidiorum (Vahl) Lynge [s. lat.]
- Remark: earlier under Caloplaca cerina (Ehrh. ex Hedw.) Th. Fr. [pro parte]
- Fungus type: lichenized
- Treatment in Estonia: certain
- sambla-kuldsamblik