List of species and infraspecific taxa
- Species: Arthonia arthonioides (Ach.) A.L. Sm.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Arthonia molendoi (Heufl. ex Frauenf.) R. Sant.
- Remark: Excluded as misidentification; re-identified as Bryostigma parietinarium
- Fungus type: lichenicolous
- Treatment in Estonia: misidentification
- Species: Candelaria pacifica M. Westb. & Arup
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- tera-leeksamblik
- Species: Catapyrenium daedaleum (Kremp.) Stein
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- lubi-rähksamblik
- Species: Catillaria atomarioides (Müll. Arg.) Kilias
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Cladonia humilis (With.) J.R. Laundon
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- väike porosamblik
- Species: Cladonia magyarica Vain. ex Gyeln.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- madjari porosamblik
- Species: Cladosporium licheniphilum Heuchert & U. Braun
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Didymellopsis pulposi (Zopf) Grube & Hafellner
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Epigloea soleiformis Döbbeler
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Lecania sambucina (Körb.) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecania sylvestris (Arnold) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Lecanora persimilis (Th. Fr.) Nyl.
- Remark: see: Myriolecis persimilis (Th. Fr.) Śliwa, Zhao Xin & Lumbsch
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Lecanora zosterae (Ach.) Nyl.
- Remark: see: Myriolecis zosterae (Ach.) Śliwa, Zhao Xin & Lumbsch
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Lepraria sylvicola Orange
- Remark: excluded as misidentification: confirmation needs further chemical analyses
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Species: Lepraria celata Slav.-Bay.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: doubtful
- Species: Leptogium intermedium (Arnold) Arnold
- Remark: see: Scytinium intermedium
- Fungus type: lichenized
- Treatment in Estonia: synonym
- väheldane tardsamblik
- Species: Lichenostigma maureri Hafellner
- Remark: includes Phaeosporobolus usneae D. Hawksw. & Hafellner
- Fungus type: lichenicolous
- Treatment in Estonia: certain
- Species: Merismatium discrepans (J. Lahm) Triebel
- Remark: see: Halospora discrepans
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Micarea lithinella (Nyl.) Hedl.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Muellerella triseptata Diederich
- Remark: see: Capronia triseptata
- Fungus type: lichenicolous
- Treatment in Estonia: synonym
- Species: Ochrolechia bahusiensis H. Magn.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Opegrapha calcarea Turn. ex Sm.
- Remark: See: Arthonia calcarea
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Peltigera frippii Holt.-Hartw.
- Remark: excluded as misidentification: re-identified as Peltigera castanea
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Frippi kilpsamblik
- Species: Phaeospora parasitica (Lönnr.) Zopf
- Remark:
- Fungus type: lichenicolous
- Treatment in Estonia: certain