List of species and infraspecific taxa
- Species: Bacidia herbarum (Stizenb.) Arnold
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidia incompta (Borrer ex Hook.) Anzi
- Remark: see: Bellicidia incompta (Borrer) Kistenich, Timdal, Bendiksby & S. Ekman
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Bacidia laurocerasi (Delise ex Duby) Zahlbr.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- kirss-mõhnsamblik
- Species: Bacidia polychroa (Th. Fr.) Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidia pycnidiata Czarnota & Coppins
- Remark: see: Bacidina pycnidiata
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Bacidia rubella (Hoffm.) A. Massal.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- punakas mõhnsamblik
- Species: Bacidia sabuletorum (Schreb.) Lettau
- Remark: see: Bilimbia sabuletorum
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Bacidia subincompta (Nyl.) Arnold
- Remark: see: Toniniopsis subincompta (Nyl.) Kistenich, Timdal, Bendiksby & S. Ekman
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Bacidia vermifera (Nyl.) Th. Fr.
- Remark: see: Bibbya vermifera
- Fungus type: lichenized
- Treatment in Estonia: synonym
- Species: Bacidina arnoldiana (Körb.) V. Wirth & Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidina chloroticula (Nyl.) Vězda & Poelt
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidina egenula (Nyl.) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidina inundata (Fr.) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bacidina phacodes (Körb.) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bactrospora dryina (Ach.) A. Massal.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Baeomyces carneus Flörke
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- kahvatu seensamblik
- Species: Baeomyces placophyllus Ach.
- Remark: excluded as misidentification: re-identified as Baeomyces rufus
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Species: Baeomyces rufus (Huds.) Rebent.
- Remark: includes earlier misidentification of Baeomyces placophyllus Ach.
- Fungus type: lichenized
- Treatment in Estonia: certain
- pruun seensamblik
- Species: Bagliettoa steineri (Kušan) Vězda
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Bellemerea alpina (Sommerf.) Clauzade & Cl. Roux
- Remark: excluded as misidentification: re-identified as Aspicilia cinerea and Lobothallia radiosa
- Fungus type: lichenized
- Treatment in Estonia: misidentification
- Species: Bellemerea cinereorufescens (Ach.) Clauzade & Cl. Roux
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: doubtful extinct
- Species: Biatora chrysantha (Zahlb.) Printzen
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Biatora efflorescens (Hedl.) Räsänen
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Biatora globulosa (Flörke) Fr.
- Remark: earlier under Lecania hyalina (Fr.) R. Sant. and Bacidia globulosa (Flörke) Hafellner & V. Wirth
- Fungus type: lichenized
- Treatment in Estonia: certain
- Species: Biatora helvola Körb.
- Remark:
- Fungus type: lichenized
- Treatment in Estonia: certain